Step I: Get prepared

BABS requires three items:

• Prepare input BIDS dataset(s) as DataLad dataset(s)
  • Raw (unzipped) BIDS dataset, or zipped BIDS dataset?
  • Requirements for a zipped BIDS derivatives input dataset
  • Using results from another BABS project as an input BIDS dataset
  • Example input BIDS datasets for BABS
• Prepare containerized BIDS App as a DataLad dataset
  • Understand the concept "container DataLad dataset"
  • Toy BIDS App
  • How to prepare a container DataLad dataset of BIDS App?
  • References
• Prepare a configuration YAML file for the BIDS App
  • Overview of the configuration YAML file structure
  • Section input_datasets
  • Section singularity_args
  • Section imported_files
  • Section bids_app_args
  • Section zip_foldernames
  • Section cluster_resources
  • Section script_preamble
  • Section job_compute_space

Note that the first two items, input dataset(s) and containerized BIDS App are both presented as DataLad datasets.